ATATCCTTTT...TTAACCTTGACT...GTCAC


Basic Information
Taxonomic Name: Arabidopsis thaliana
Common Name: Thale cress
Genome Assembly: "TAIR10"
Gene Symbol / Name:*
U12-Score:* 10.1614
Intron Class: U12-Dependent
Unique ID: [email protected]_2(16)

Coordinates
Chromosome: 3
Start: 19707784
Stop: 19707871
Length: 88
Strand: +
Intron Rank: 2
Intron Phase:* 2

Sequence Information
Terminal Dinucleotides: AT-AC
Upstream Exonic Sequence: GTTTGGGATTTAGATTCTTTCACCAAAACCTTTGTTGAAAGATTAAATTC
Downstream Exonic Sequence: GCTTGTTCCAGAGATTGTTGCTTTGAAAACTATTGCTGCATATCGTAGCG
Putative branch point region: TTAACCTTGACT
Full Intron Sequence: Show
ATATCCTTTTATCTTTGCTTTTTTAATACACGCTTAATGATTGTGACTATACTCACTAGTATTGGTTAACCTTGACTACTTCGGTCAC
Click on a row to go to that intron's info page. The splice sites are marked with vertical bars and the putative branch point sequence is in between the ellipses.

Orthologous Introns

Taxonomic Name Gene Name Sequence
Glycine max CTCAAAGTTAAAATC|ATATCCTTTA...GATTCCTTAGCA...GTTAC|AGTTTCTGGTGAGAT
Zea mays ATCTAAGCTGAATTC|ATATCCTCTA...ATATCCTTAACT...CTCAC|AGTTTCTAACCAAAT
Oryza sativa CACTAAGCTGAAATC|ATATCCTCCC...ATTTCCTTAACT...ATCAC|AGTTGCCAACAAAAT
Arabidopsis thaliana TGAAAGATTAAATTC|ATATCCTTTT...TTAACCTTGACT...GTCAC|GCTTGTTCCAGAGAT
If there's only one row, this intron has no annotated orthologs.

External Resources
Ensembl Gene ID: AT3G53180
Ensembl Transcript ID: AT3G53180.1